[Gmod-help] synteny

[Scott Cain]

Hi Scott,

With CMap, you can certainly get close.  For example, the attached
image shows synteny between a rice chromosome and a sorghum
chromosome.  The image is pretty "noisy", but that is because all of
the data about relationships between the two chromosomes are included.
 The person who supplied the data could have decided to limit the
number of correspondences to very few and resulted in a cleaner
picture.

Scott


On Tue, Jan 26, 2010 at 11:41 AM, Scott Harding <thesis1977 at gmail.com> wrote:
>
>
> Hi
>
>         I was wondering if it is possible to produce images (with huge
> blocks of synteny) as shown in the attached image.
>
> Thanks
>
> Scott
>
>



-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research
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