[Gmod-help] Alternatives to DBIx::DBStag for loading ontologies

[James Estill]

I am to the point where I am attempting to load ontologies into my CHADO installation.

Using 'make ontologies' gives

Died at lib/Bio/Chado/Builder.pm line 315, <STDIN> line 1.
make: *** [ontologies] Error 2

I can download the ontologies and convert to xml manually, but it looks like DBIx::DBStag is broken in some way, when I do

stag-storenode.pl -d 'dbi:Pg:dbname=chado_test;host=localhost;port=5432' --user myname --password mypassword ro.oboxml

I get the error message

Cannot quote a reference at /Library/Perl/5.8.8/DBIx/DBStag.pm line 3736.

Is there an alternative way to load ontologies into the database that do not rely on DBIx::DBStag? I installed DBIx::DBStag the "manual" way and it is apparently not doing its job.

-- Jamie Estill
-- jestill at uga.edu
-- http://jestill.myweb.uga.edu
-- http://www.epernicus.com/people/jestill