[Gmod-help] Unrecognized features/regions

[Alex Nguyen]

Hi,

I successfully set-up Gbrowse for the SGD-made GFF3 file, and am trying 
to set-up a similar Gbrowse for the Saccharomyces bayanus genome.

I created what looks to me like a legit GFF3 file and loaded the GFF3 
using bp_seqfeature_load.pl (just as I did for the SGD-made GFF3 file).

Here is an exert of the file:
contig436    YGOB    contig    1    4804    .    .    .    
ID=contig436;Name=contig436
contig436    YGOB    gene    530    3064    .    +    .    
ID=Sbay_436.2;Name=Sbay_436.2;Note=Ortholog%20assigned%20by%20YGOB:YML029W
contig436    YGOB    gene    3478    3906    .    +    .    
ID=Sbay_436.3;Name=Sbay_436.3;Note=Ortholog%20assigned%20by%20YGOB:YML030W

The SQL database for both setup look virtually identical to me, but here 
are some relevant parts:
typelist
1   contig:YGOB
2   gene:YGOB

locationlist
18   contig436

name
39    contig436   1
40    Sbay_436.2   1
41    Sbay_436.3   1

feature
39    1    18    1    4804    0    1    0    1
40   2   18   530   3064   1   1   0   1
41   2   18   3478   3906   1   0   3   1

I have a hard time tracing why simply searching for something like 
contig436 fails (error type NOT_FOUND). My conf file is exactly the same 
as the working one except pointing to another database.

Alex