[Gmod-help] GBrowse 2 processed_transcript tracks

Scott Cain scott at scottcain.net
Fri Sep 25 09:22:50 EDT 2009


Hi Wan Ting,

When a problem like that happens, it is usually an aggregator issue.   
Which data adaptor are you using (Bio::DB::GFF,  
Bio::DB::SeqFeature::Store or something else)?

Scott


On Sep 25, 2009, at 2:06 AM, POH Wan Ting wrote:

> Hi,
>
> I noticed for the processed transcript tracks, the intron regions  
> will not be shown when zoomed in.
> For example, there is a gene  uc009vip.1 at chr1:1116..4272 when I  
> set the browser to this range, I can see the full gene. But when I  
> zoom into an intron region, say chr1:2160..2370, the gene will not  
> be shown. Is there a way to display the gene even if it’s in the  
> intron region?
>
> Thanks in advance for your help!
>
> Best Regards,
> Wan Ting
>
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Scott Cain, Ph. D. scott at scottcain dot net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research








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