[Gmod-help] Loading sequences with no GI in chado

[Scott Cain]

Hi Paul,

So what you have is files formatted like GenBank files, but not actual
GenBank files?  Where did the data come from?  If converting those
isn't working properly, it is really a BioPerl problem (though still
ultimately our problem :-)

What does happen?  Would it be possible to go back to the originator
of this file to get it in some other format?

Scott




On Fri, Sep 25, 2009 at 2:06 AM, Paul Visendi <P.Visendi at cgiar.org> wrote:
> Halo Help desk,
>
> We at the International Livestock Research Institute have sequenced a strain
> of Theileria parva .
>
> we have set up chado on postgresql and we are trying to store this sequence
> information in the chado schema.
>
> converting this sequence files to GFF3 has been a problem. How can this be
> done since the files we  have are in genbank format without accession
> numbers, GI identifiers etc
>
> only the features section exists
>
> Thank you in advance,
>
> visendi
>



-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research