[Gmod-help] deleting features via gff file

Anne Descour anne at agcol.arizona.edu
Tue Oct 27 13:25:15 EDT 2009


Hello,

I've been told I can delete features previously loaded to a chado 
database by using the gmod_bulk_load_gff3.pl script with the original 
gff file used for loading. However this page:

http://gmod.org/wiki/Chado_Update_via_GFF

suggests that this capability was only on a wish list. If there is not 
an existing delete script, I presume I can just delete by name from the 
feature table. Might the bulk_load influence any other tables besides 
the feature table?  Thanks,

Anne

------------------------------------------------------------
Anne Descour
AGCoL (Arizona Genomics Computational Laboratory)
BIO5 Institute

Email:  anne at agcol.arizona.edu  http://www.agcol.arizona.edu
Phone:  (520) 626-9598  FAX: (520) 626-4824
Mail:   Thomas W. Keating Bioresearch Building 
        1657 E. Helen Street
        University of Arizona, Tucson AZ 85721 





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