[Gmod-help] Gbrowse2

[Scott Cain]

Hi Charlotte,

Samtools can be used with GBrowse 1.70, with some limitations. See
this news item:

  http://gmod.org/wiki/GMOD_News#GBrowse_NGS_Tutorial_.26_Poster

For GBrowse 2, you can install a beta release from cpan:

  cpan> install LDS/GBrowse-1.9971.tar.gz

or you can get an svn checkout:

  svn co https://gmod.svn.sourceforge.net/svnroot/gmod/Generic-Genome-Browser/trunk

Scott



On Fri, Nov 13, 2009 at 12:59 AM,  <charlotte.anderson at dpi.vic.gov.au> wrote:
>
> Hello
>
> I recently attended the Bioinformatics Australia 2009 conference where there
> was a Gbrowse NGS tutorial.  I was wondering if it is possible to use
> samtools with Gbrowse 1.7.  If not where can I download Gbrowse2 from as I
> can not find it anywhere.
>
> Thanks
>
> Charlotte Anderson
> Bioinformatics Software Developer
>
> Department of Primary Industries
> La Trobe Research and Development Park
> 1 Park Drive
> Bundoora, Vic, 3083, Australia
> Telephone: (+613) 9479 5377
> Fax: (+613) 9479 3113
> Email: charlotte.anderson at dpi.vic.gov.au
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-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research