[Gmod-help] Re: [Gmod-gbrowse] Build test on gbrowse2 fails

[Wes Barris]

Dave Clements, GMOD Help Desk wrote:
> Hi Wes,
> 
> I'm guessing from subsequent emails that you got past this problem?

Hi Dave,

No, I have not got past this.  I am unable to build gbrowse2.

> Thanks,
> 
> Dave C
> 
> On Mon, Nov 9, 2009 at 3:59 PM, Wes Barris <wes.barris at csiro.au> wrote:
>> Hi,
>>
>> I am getting this error when running Build test on a freshly downloaded
>> copy of gbrowse2:
>>
>> wes at bioweb> sudo ./Build test
>> NOTE: Run ./Build reconfig to change existing configuration.
>> .
>> .
>> .
>> gcc -I/usr/local/src/bioinformatics/gbrowse2/Generic-Genome-Browser/libalign -I/usr/lib/perl5/5.8.5/i386-linux-thread-multi/CORE -DXS_VERSION="1.9971" -DVERSION="1.9971" -fPIC -c -D_REENTRANT
>> -D_GNU_SOURCE -DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdbm -O2 -g -pipe -m32 -march=i386 -mtune=pentium4 -o
>> lib/Bio/Graphics/Browser2/CAlign.o lib/Bio/Graphics/Browser2/CAlign.c
>> lib/Bio/Graphics/Browser2/CAlign.c: In function `boot_Bio__Graphics__Browser2__CAlign':
>> lib/Bio/Graphics/Browser2/CAlign.c:295: error: `PL_unitcheckav' undeclared (first use in this function)
>> lib/Bio/Graphics/Browser2/CAlign.c:295: error: (Each undeclared identifier is reported only once
>> lib/Bio/Graphics/Browser2/CAlign.c:295: error: for each function it appears in.)
>> error building lib/Bio/Graphics/Browser2/CAlign.o from 'lib/Bio/Graphics/Browser2/CAlign.c' at /usr/lib/perl5/site_perl/5.8.5/ExtUtils/CBuilder/Base.pm line 110.
>>
>> Is gbrowse2 in a buildable state right now?
>> --
>> Wes Barris <wes.barris at csiro.au>
>>
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> 
> 
> 


-- 
Wes Barris <wes.barris at csiro.au>