[Gmod-help] Re: [Gmod-gbrowse] GBrowse and NGS Data: Poster and Tutorial

[Charles Plessy]

Le Thu, Nov 05, 2009 at 09:48:34AM -0800, Dave Clements, GMOD Help Desk a écrit :
> 
> GBrowse NGS Tutorial
>   http://gmod.org/wiki/GBrowse_NGS_Tutorial
>   This step by step tutorial walks you through configuring GBrowse 2 to display
>   data in SAMtools databases.  It includes a VMware image to work
>   with, and uses the example human data that is included with SAMtools.

Dear Dave,

I noted that the VMware image is Debian or Ubuntu based. On Debian, the
samtools, Bio::Graphics and Bio::DB::Sam packages are up-to-date in the
unstable branch. We have a semi-official service to rebuild the packages from
the unstable branch against the stable one, backports.org. Just let me know if
you would be interested to list it in /etc/apt/sources.list so that the users
would only have to use apt-get in order to grab the latest packages. For the
moment I did not prepare backports, but would be happy to do so on demand.

Have a nice day,

-- 
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan