[Gmod-help] CRE annotation

[Gray Camp]

Hello. I'm a grad student in genetics at UNC-Chapel Hill. I am working
on a project to understand the transcriptional regulation of a certain
gene. I'd like to annotate the coding and non-coding regions of the
gene and map potential regulatory elements/information directly to the
sequence. Many of the potential regulatory elements/transcription
factor binding sites will be overlapping. I would also like to include
information about the regulatory sequence into the annotation. I
happened across your site while searching for an annotator that fits
my needs. Do you have a recommendation for which software would be
most useful for me? Right now I am working on a single gene. Artemis
is the closest thing I have found so far but it had some features I
didn't like and wanted to try something else. Thanks for you help.

Gray Camp