[Gmod-help] GMODTools genbank generation
Barry Dancis
bdancis at digiconasp.com
Wed May 6 00:06:59 EDT 2009
Hi--
I am trying to generate genbank files and I get the error:
Can't use string ("33/64") as a HASH ref while "strict refs" in use at lib/Bio/GMOD/Bulkfiles/BulkWriter.pm line 96.
If I replace line 96:
@ENV{@keys} = @{%$sconfig}{@keys};
with an expanded version:
foreach my $next_key (@keys) {
printf STDERR "(%s) %s\n", ($next_key, $sconfig->{$next_key});
$ENV->{$next_key} = $sconfig->{$next_key};
}
it works fine and prints out:
(species) Tst mito
(org) tmito
(date) 20090505
(title) Test Spm Data Release
(rel) tmito1
(relfull) tmito_20090505
(relid) 1
(release_url) /genome/Tst mito/release-tmito1.html
which look correct.
Any idea why "@ENV{@keys} = @{%$sconfig}{@keys};" would fail?
Thanks,
Barry
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