[Gmod-help] problem with newest version of gbrowse in CVS

[Lincoln Stein]

It will be fixed this weekend. Sorry for the inconvenience.

Lincoln

On Wed, Mar 11, 2009 at 11:37 PM, Dave Clements, GMOD Help Desk <
gmodhelp at googlemail.com> wrote:

> Hi Zhangjun,
>
> Thanks for reporting this.  This problem was also reported by Antonia
> Bilardi on on the GBrowse list.  A bug report has been created (by
> Scott Cain) for it at
>
> http://sourceforge.net/tracker2/?func=detail&aid=2564459&group_id=27707&atid=391291
>
> Unfortunately, I don't have a timeline for you for when it will be fixed.
>
> Dave C.
> GMOD Help Desk
>
> Was this helpful?  Let us know at http://gmod.org/wiki/Help_Desk_Feedback
>
>
>
> On Wed, Mar 11, 2009 at 11:24 AM, Zhangjun Fei <zf25 at cornell.edu> wrote:
> > Dear Sir/Madam:
> >
> > My group recently downloaded the newest version of gbrowse from CVS to
> get
> > rid of the (harmless) error message in apache log file:
> > Bio::Graphics::BrowserConfig=HASH(0xnnnnnnn) at
> XXX/Bio/Graphics/Browser.pm
> > line 587.
> >
> > We found a small bug in this new version. It ignores the content of
> "head"
> > section in the configuration file. An example, if we include the
> following
> > option in the .conf file, the "<script>...</script>" will be ignored in
> the
> > output html.
> >
> > head = <script type=text/javascript src="/gbrowse/js/test.js"></script>
> >
> >
> > Thanks and best regards,
> >
> > Zhangjun Fei, Ph.D
> > Boyce Thompson Institute
> > Cornell University
> > Ithaca, NY 14853
> >
> >
>



-- 
Lincoln D. Stein
Director, Informatics and Biocomputing Platform
Ontario Institute for Cancer Research
101 College St., Suite 800
Toronto, ON, Canada M5G0A3
416 673-8514
Assistant: Renata Musa <Renata.Musa at oicr.on.ca>
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