[Gmod-help] Problems with gmod_bulk_load_gff3

fernando bueno stradlinbueno at gmail.com
Tue Jun 30 13:37:41 EDT 2009


Hi!

I'm from Brazil. I'm with a problem to insert data in my CHADO schema.
When the command :
gmod_bulk_load_gff3.pl --organism yeast  saccharomyces_cerevisiae.gff
is executed, this error appears:

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: no cvterm for chromosome
STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/local/share/perl/5.10.0/
Bio/Root/Root.pm:357
STACK: Bio::GMOD::DB::Adapter::get_type
/usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm:4224
STACK: /usr/local/bin/gmod_bulk_load_gff3.pl:783
-----------------------------------------------------------
Issuing rollback() due to DESTROY without explicit disconnect() of
DBD::Pg::db handle dbname=chado;port=5432;host=localhost at
/usr/local/share/perl/5.10.0/Error.pm line 184.


could your help me?


thanks!!!
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