[Gmod-help] Synbrowse x Gbrowse 1.70 question

[Scott Cain]

Hi Marcelo,

I saw that you mailed the GBrowse mailing list and also saw this mail
to the help desk, and thinking they were the same email, didn't allow
the GBrowse mailing to go through, so I'm cc'ing this to the GBrowse
mailing list.  I'm also cc'ing Xiaokang.

I don't know of anybody who has used SynBrowse with GBrowse 1.70, so
it is possible that something broke.  I'm not sure what to tell you
beyond that, because I don't know what version of GBrowse you would
have to go back to in order to get it to work.  Can anybody help out
with that?

Thanks,
Scott


On Wed, Dec 23, 2009 at 9:06 AM, Marcelo Iwata <marcelo011982 at gmail.com> wrote:
> Brazillian greetings
>
>  Is Synbrowse adapted to new versions of Gbrowse (1.70).
> The question is because i tried to run the example that comes with the code,
> and it becomes an error , after the screen (Synbrowse1.png) , it didn't work
> as i was expected, when i click in one of the links (pink ones).
>
> So, when i come to apache log error, it retrieves me a message like:
>
>
> Can't call method "name" without a package or object reference at
> /var/www/cgi-bin/synbrowse line 1528., referer:
> http://localhost/cgi-bin/synbrowse?config=synbrowse&relink=1&tname=5:7135000..7210000&name=Lj2:64670000..64773000&qry_species=Lotus&ref_species=Arabidopsis&key_align=Protein_Align&Mode=Coding_Gene
>
> I would be grateful for any information you can give me.
>
> Thanks.
>



-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research