[Gmod-help] Re: [Gmod-schema] Problems to Insert a Genbank in Chado

[Don Gilbert]

Fernando (and Scott),
Those type conversions for Genbank > GFF/SO are handled in the bioperl
Bio/SeqFeature/Tools/TypeMapper.pm
"mature_peptide" used to be a SO term, maybe they dropped it.
NCBI keeps adding new "pseudoXXX" feature types that usually map to
SO "pseudogenic_XXX" types, but check for CDS, and use as Scott suggests
pseudogenic_exon as a good alternate.
- Don