[Gmod-schema] [Gmod-help] How to store sequence depth in Chado
Don Gilbert
gilbertd at cricket.bio.indiana.edu
Fri Apr 24 18:51:33 EDT 2009
> have a bunch of 454 sequence reads that correspond to genes
If I were putting that kind of data into a Chado db, I'd treat it like
ESTs or proteins, mapped to the genome, with scores, like with Blast, Sim, etc.
Your read count per contig or gene is the score, and you presumably locate
them on your genome with some blast/blat equivalent?
The analysis/analysisfeature tables have the slots for those kinds of scores,
and gbrowse via chado should retrieve them. -- Don
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