[Gmod-help] storing average expression data in MAGE module of Chado?
Ian Davis
ian.w.davis at gmail.com
Tue Apr 21 17:32:34 EDT 2009
Hi,
I'm trying to set up a Chado database to hold expression data from a
bunch of Affymetrix chips, using the MAGE module. I can see that for
a single chip, I should create one new entry in each of "assay",
"acquisition", and "quanitification", and for each expression
measurement create a new entry in "elementresult".
However, we often do multiple replicates of the same experiment, and
work from the averaged expression levels. I can see how to store the
individual replicates (as above). But I can't see how to store the
*average* of them. It seems like I would create a new
"quantification" (and associated "elementresult"s) that referred to
multiple "acquisition"s, but I can't see a way to do that.
Any suggestions?
Thanks!
Ian
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