[Gmod-help] Re: [Gmod-gbrowse] multi-segmented feature looks fine at low power, but connecting lines between segments disappear when zoomed in

Don Gilbert gilbertd at cricket.bio.indiana.edu
Mon Sep 15 16:29:29 EDT 2008



Burcu,

It may be you have to work thru a few changes.  The 'iD' problem likely was
part of it, your aggregator also needs to be updated with corrections for ID/Parent
tags.  

>> EntrezGene{CDS,exon/mRNA}

This one should work when CDS,exon have Parent=mRNA.ID and mRNA has ID=
This is equivalent to the processed_transcript aggregator
Bio/DB/GFF/Aggregator/processed_transcript.pm

Aggregators are good when using Bio/DB/GFF databases; the Bio/DB/SeqFeature/Store
databases do not use aggregators.

PS, one of the tools, likely bp_genbank2gff3, created those funky 'iD' tags,
for reasons of its own.

- Don Gilbert



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