[Gmod-help] questions

Brian Cox lungboy at sickkids.ca
Thu Sep 11 11:48:14 EDT 2008


Hello,
This looks like an interesting project. I have several datasets that I might
like to try to fit into this schema. I have a data set of expression
patterns in mouse embryos (colour images, different time points and points
of view, both whole mount and sectioned) also some have phenotypes that
would need to be scored. I noticed that your database program had a
phenotype module but I didn't see any reference to modules for image
information or for anatomical descriptions for expression patterns, not mRNA
or protein levels. Have you looked at emage
(http://genex.hgu.mrc.ac.uk/Emage/database/emageIntro.html)? Are there
modules being created for this? I have a fair amount of experience with
Java/biojava and mysql and would be willing to undertake some programming
and development myself. My data set is currently in a filemakerpro database,
but we have an interest in getting the data in an online format for
publication. 

I am also generating protein interaction datasets in the mouse and will have
a need for bring this data in to a web accessible resource, is that a module
that would be created?

Thanks
Brian

Brian Cox, Ph.D.
Laboratory of Janet Rossant
Hospital for Sick Children
 
TMDT, room 13-305
101 College Street,
Toronto Ontario 
Canada M5G 1L7
 
cell: 416-358-5763





More information about the Gmod-help mailing list