[Gmod-help] Re: [Gmod-gbrowse] installing GBrowse 1.69v

[Alessandra]

Well, I observed apache2 error and I have not got egual error now.
I have got two error type when I run gbrowse, one:

Variable "$segment" will not stay shared at /seq/gbrowse/bin/gbrowse line 1003.
Variable "$page_settings" will not stay shared at
/seq/gbrowse/bin/gbrowse line 2738.
Variable "$plugin_action" will not stay shared at
/seq/gbrowse/bin/gbrowse line 3064.
Bio::Graphics::BrowserConfig=HASH(0x1ba7ef0) at
/usr/local/lib/perl/5.8.8/Bio/Graphics/Browser.pm line 587.
Argument "" isn't numeric in subtraction (-) at
/seq/gbrowse/bin/gbrowse line 901.
Argument "" isn't numeric in subtraction (-) at
/seq/gbrowse/bin/gbrowse line 901.
Bio::Graphics::BrowserConfig=HASH(0x1ba7ef0) at
/usr/local/lib/perl/5.8.8/Bio/Graphics/Browser.pm line 587.
Bio::Graphics::BrowserConfig=HASH(0x1ba7ef0) at
/usr/local/lib/perl/5.8.8/Bio/Graphics/Browser.pm line 587.

and two:

Variable "$segment" will not stay shared at /seq/gbrowse/bin/gbrowse
line 1003, <DATA> line 192.
Variable "$page_settings" will not stay shared at
/seq/gbrowse/bin/gbrowse line 2738, <DATA> line 192.
Variable "$plugin_action" will not stay shared at
/seq/gbrowse/bin/gbrowse line 3064, <DATA> line 192.
Bio::Graphics::BrowserConfig=HASH(0x1fa6c00) at
/usr/local/lib/perl/5.8.8/Bio/Graphics/Browser.pm line 587.
Bio::Graphics::BrowserConfig=HASH(0x1fa6c00) at
/usr/local/lib/perl/5.8.8/Bio/Graphics/Browser.pm line 587.
Bio::Graphics::BrowserConfig=HASH(0x1fa6c00) at
/usr/local/lib/perl/5.8.8/Bio/Graphics/Browser.pm line 587.
Bio::Graphics::BrowserConfig=HASH(0x1fa6c00) at
/usr/local/lib/perl/5.8.8/Bio/Graphics/Browser.pm line 587.

My sysadmin tell me that it is running mod_perl..

thanks for your replay.
best,
alessandra.

On Mon, Oct 13, 2008 at 11:23 PM, Dave Clements, GMOD Help Desk
<gmodhelp at googlemail.com> wrote:
> Hi Alessandra,
>
> I apologize for the delayed response.  You e-mail got lost in my inbox.
>
> I took a look at the code and talked to Scott Cain (who's Perl greatly
> exceeds mine).
>
> We aren't sure what to make of the "not stay shared" errors.  Scott
> wondered if you were running mod_perl?  We do think the non-numeric
> errors can be ignored.
>
> Thanks,
>
> Dave C
>
> On Fri, Sep 26, 2008 at 5:30 AM, Alessandra
> <alessandra.bilardi at gmail.com> wrote:
>> Hi all,
>> I'm installing GBrowse 1.69v. I used perl script gbrowse_netinstall.pl
>> and it works. I have got any errors in apache2 error.log:
>>
>> Variable "$segment" will not stay shared at /seq/gbrowse/bin/gbrowse
>> line 1010, <DATA> line 192.
>> Variable "$page_settings" will not stay shared at
>> /seq/gbrowse/bin/gbrowse line 2745, <DATA> line 192.
>> Variable "$plugin_action" will not stay shared at
>> /seq/gbrowse/bin/gbrowse line 3071, <DATA> line 192.
>> Argument "" isn't numeric in subtraction (-) at
>> /seq/gbrowse/bin/gbrowse line 908.
>> Argument "" isn't numeric in subtraction (-) at
>> /seq/gbrowse/bin/gbrowse line 908.
>>
>> I would like to know if it is possible to resolve errors.
>> Best,
>>
>> --
>>  Alessandra Bilardi, Ph. D.
>> ----
>>  CRIBI, University of Padova, Italy
>>  http://www.linkedin.com/in/bilardi
>> ----
>>
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>
>
>
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>



-- 
 Alessandra Bilardi, Ph. D.
----
 CRIBI, University of Padova, Italy
 Via Ugo Bassi, 58/B - 35121 Padova
 Tel +390498276165 Fax +390498276159
  http://www.linkedin.com/in/bilardi
----
La semplicità è la più alta forma di perfezione (Leonardo Da Vinci)
Keep simple, stupid (KISS, IT)
----