[Gmod-help] loading fasta of contigs vs chromosomes

[Scott Cain]

Hi Joan,

In order for GBrowse to use the fasta sequence for the dna glyph or
translation glyphs, the sequence has to belong to the reference
(chromosome) sequence, so you need option (2).

Scott


On Fri, Oct 10, 2008 at 12:26 PM, Joan Pontius <pontiusj at ncifcrf.gov> wrote:
>
> Is it possible to only load the fasta files of individual contigs,
> and  somehow designate their position on the chromosomes.
> Or do I need to generate a single fasta of the chromosomes, with
> the contig sequences and the appropriate numbers of NNNN between the
> contigs.
> Thanks in advance
> Joan
>
> Joan Pontius-Contractor SAIC
>
> Laboratory of Genomic Diversity
>
> Bldg 560-NCI
>
> Frederick Maryland
>
> (301)846-1761
>
>



-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   cain.cshl at gmail.com
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research