[Gmod-help] Re: [Gmod-gbrowse] set up QTL track in GBrowse

[Zhiliang Hu]

Thank you Dave,

That's helpful!  I also get some replies and now I have some ideas as how to go with.

Zhiliang

At 11:13 AM 10/3/2008 -0700, you wrote:
>Hi Zhiliang,
>
>I took a look around and I found lots of places that show the spans of
>QTLs but not inner workings.  (BovineGenome.org show peaks, but not
>within GBrowse.)
>
>The best I could find was a posting from 2006:
>
>  http://www.nabble.com/Re:--Gmod-gbrowse--aggregators-issue--td7431347.html
>
>I think that posting is about GenmapDB, and unfortuantely, that
>appears not to be up today.
>
>Hope this helps,
>
>On Thu, Oct 2, 2008 at 7:12 AM, Zhiliang Hu <zhu at iastate.edu> wrote:
>> We plan to set up a QTL track in GBrowse for cattle and chicken, aligned
>> with their respective genomes.  While this seems to be straight forward but
>> there are some tricks we may need to work out, such as - is it possible or
>> how to show the QTL peak location besides the span, etc.
>>
>> I didn't find but perhaps someone might have already worked on this?  I am
>> posting to see if anyone wish to kindly share?
>>
>> Thanks in advance,
>>
>> Zhiliang
>>
>>
>> --
>> Zhi-Liang Hu (PhD)
>> Associate Scientist,
>> Department of Animal Science,
>> Center for Integrated Animal Genomics,
>> National Animal Genome Research Program,
>> Iowa State University
>> Tel: 901-759-0643
>> Mob: 901-212-2820
>> Web: http://www.animalgenome.org
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>
>
>
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