[Gmod-help] gmod bulk upload

[Stephen Ficklin]

Hello,

 

We have an installation of chado that has about 7million records in the
feature table.  We're uploading our data as GFF files using the
gmod_bulk_load_gff3.pl  and we find that it is taking a very long time.
It has taken about 28 hours to upload 190,220 entries in two GFF files.
Is this normal?   It seems the more entries we add to the database the
slower these uploads become.  We still have over a million more records
to add to the database.  Is there any way we can speed up this upload?

 

Thanks,

Stephen Ficklin

Clemson University Genomics Institute

http://www.genome.clemson.edu/

864-656-4298

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