[Gmod-help] DB loading

[Ed Johnson]

Hello Helpdesk,

 

I've gotten Chado and GBrowse installed and I'm trying to load some EST
sequences and their Blast returns.  The first pass I used a mixture of the
bp_* and gmod_ load scripts and couldn't match the Blast data to the loaded
sequences. 

 

What I want to do is load a fasta file of EST sequences and a Blastx file
run against the sequences.  What tools should I be using?  

 

I'd also like to load a TGICL assembly .ace file and display the the
contigs.  Has anyone written a parser? I've seen hints on various sites that
such a thing might exist but I haven't found anything firm.

 

We have a database in-house and tools to accomplish the above, but we're
looking for more flexibility.  Any help would be appreciated.

 

Thanks,

 

Ed

 

 

Ed Johnson

Scientific Computing Professional Specialist

IBL - Laboratory for Genomics and Bioinformatics

University Of Georgia

Room 154 - IBL

110 Riverbend Road

Athens, Ga 30602

Phone (706) 542-1039

 

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