[Gmod-help] Re: [Gmod-schema] Handling of gene split/merge

[Suzanna Lewis]

You might find some useful documentation here in section G.7 (Gene  
Model Annotation Guidelines):

http://fb2008_05.flybase.org/static_pages/docs/refman/refman-G.html

I'm still trying to locate the document we used when encoding this in  
Apollo (as embodied in the FlyNameAdapter class)

On Aug 4, 2008, at 5:44 PM, Chris Mungall wrote:

> For groups using Apollo to edit gene models, the policy is essentially
> dictated by Apollo, which I believe follows the scheme Dave outlines
> below
>
> On Aug 4, 2008, at 1:44 PM, Dave Clements, GMOD Help Desk wrote:
>
>> Siddhartha,
>>
>> Many MODs have a standard policy of always deleting the old gene(s)
>> and making their IDs, symbols, names, and synonyms be synonyms of the
>> newly created gene(s).
>>
>> Unfortunately, I'm not aware of any documentation or scripts that  
>> will
>> help you do this (plus other gene data migration) in Chado.  :-(
>>
>> If anyone does have experience with this in Chado, please post it  
>> here
>> and I'll see that it makes it into the GMOD web site.
>>
>> Thanks,
>>
>> Dave C.
>> GMOD Help Desk
>>
>> On Mon, Aug 4, 2008 at 12:58 PM, Siddhartha Basu <biosidd at gmail.com>
>> wrote:
>>>
>>> Hi,
>>> I am trying to figure out/understand the logic in handling gene
>>> split/merge in
>>> chado. Is there any documentation out there that might help me or
>>> could
>>> somebody give me a brief idea/outline about the logic involved.
>>>
>>> thanks,
>>> -siddhartha
>>>
>>> Siddhartha Basu
>>> software developer, dictybase
>>> www.dictybase.org
>>>
>>>
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>>
>>
>> -- 
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>>
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