[Gmod-help] genotype and SNPs

[Dave Clements]

Jozef,

I will respond to your query tomorrow (Friday).  I meant to research
this today, but I have run out of time.

With apologies,

Dave Clements
GMOD Help Desk

On 11/14/07, Josef Jurek <jurek at cs.uchicago.edu> wrote:
>
> Hello Dr. Clements;
>
> Our lab has genotype information,
> (SNPs, microsatelites) for thousands of subjects
> and I am presently trying to figure out how
> we can load this information into the Chado schema.
>
>
>   First, from the available documentation I see how SNP
>   names are put in rows in the table "feature" and that
>   alternate nucleotides are stored in the table "featureloc"
>   and linked to rows in "feature".
>
>
>   Now, in what table do we put rows for our subjects
>   (the people)?  Would this be in the table "genotype"?
>
>
>   And then, if "genotype" is the correct table for
>   our subjects, then how are these subjects linked
>   to a particular nucleotides in "featureloc" for
>   each SNP?
>
>
> I have a ER diagram of the relevant parts
> of the schema here, it that is of help:
> http://jurek.uchicago.edu/gmod
>
> Thank you for your help; Josef
>
>
> Josef Jurek
> Department of Human Genetics
> The University of Chicago
> jurek at cs.uchicago.edu
> 773 834 1304
>
>