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This request came to <a class="moz-txt-link-rfc2396E" href="mailto:info@warelab.org">"info@warelab.org"</a>. Forwarding here to see if
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<th align="RIGHT" nowrap="nowrap" valign="BASELINE">Subject:
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<td>FW: promoter elements</td>
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<th align="RIGHT" nowrap="nowrap" valign="BASELINE">Date: </th>
<td>Thu, 19 Mar 2015 15:36:25 +0100</td>
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<th align="RIGHT" nowrap="nowrap" valign="BASELINE">From: </th>
<td>john@home <a class="moz-txt-link-rfc2396E" href="mailto:john.groenendijk@upcmail.nl"><john.groenendijk@upcmail.nl></a></td>
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<th align="RIGHT" nowrap="nowrap" valign="BASELINE">To: </th>
<td><a class="moz-txt-link-abbreviated" href="mailto:info@warelab.org">info@warelab.org</a></td>
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<pre>Dear madam, sir,
Did you receive this correctly?
Thanks!
Van: john@home [<a class="moz-txt-link-freetext" href="mailto:john.groenendijk@upcmail.nl">mailto:john.groenendijk@upcmail.nl</a>]
Verzonden: woensdag 18 maart 2015 15:03
Aan: '<a class="moz-txt-link-abbreviated" href="mailto:ware@cshl.edu">ware@cshl.edu</a>'
Onderwerp: promoter elements
Dear Dr. Ware,
We have an 1.8kb upstream region of a predicted gene in asparagus which we
would like to study further. One of our first questions would be to identify
cis-regulatory elements; the gene is expressed at low levels. Since we are
new to this and started a literature study, we came across your review
article of 2013 and some databases including plantprom. I hope you can be
of assistance with identifying CRE predictions and/or directions on how we
should tackle this. Thanks in advance!
>upstream sequence including atg
GGGCCAACCCCGGACCGGGCCCGGACTGACGGGCTTTTTGGATTGGCCTAAACATATGCATTTATCTTTAAAAGTC
CATGTTATTTTTATGGGCTTGTTGCAAGCAAGCATGGCGGTAAACTAATCCTGGGTTTCAACATTAGTGCTAGTAA
AGCTTTGCCATCTTTTTTTTTTTTGCTTTAAAGGGCCAACCCCGGACCGGGCCCGGACTGACGGGCTTTTTGGATT
GGCCTAAACATATGCATTTATCTTTAAAAGTCCATGTTATTTTTATGGGCTTGTTGCAAGCAAGCATGGCGGTAAA
CTAATCCTGGGTTTCAACATTAGTGCTAGTAAAGCTTTGCCATCTTTTTTTTTTTTGCTTTAAAGTAATTTTTTAG
TAAACTTTTATTCTTAATAGTTCACAACAACACGAGAACCATACAAGTGAAAGAAATTTTATCCCCAAAAAATTTC
AAATAACCATCTCCAATTTTCACCAAATAATCCATCACAATTATCTATATTATACGCAATTCCACTGTTTTCTCGA
TTTTTTAACTTTACAAGTCATTAGATTCCTAGCACACAAAATTACCATTGTTTGTGGGAGGAAAAAAGGCATATTC
TACGCTTACAACCCAAGTCACACGATAATCACATTCTTCAAGCTTATGAGGAAACTTCGTCCTATTCCCCCAACTT
AAATTATTACAAAAAATCAGGAATAAGGAAAAAAGAAAAAATTTCCTTCTCTAAAATTTCAACTAAGACCATTATC
AACTTCTTCCAAATAATTTGTACCCATCATCAGTTTCTACCGTTCTCACTCATCGAAACATAAATTTTACAGTTTC
TACAAGAATAAAATAAACAAGACTGAGTCATAGAGAGAGGAGAAGATGGCAGCGAGATCGGAGGAGAAGATCTTGT
CGAACTAGTAGGGATGAGCTCAAGGTTGGTGGTGTTGGCACTGGGGGATGGGGAGAGATAGACGATGGGATTCGAC
GGAAAGATGAAGAGGGAGAGGAGGAGGGTTAGGAGAAAGTAGGAGAGGAGGTTGAATCGAAAGTTGAGAATGACGA
CGAGCTCGAGAAAGGAGTAGATGGCAGCGAGTTTGAAGGAGAAGATCTTGTCAAACAAGTTGAGCATGAGCTCAAG
GTCGGTAGTGGCGAAGGGCAAGGCGACAGAGTTAGACGGCAGATGCCAAGGAGAAGATGAAGAGGGAGAGGAGGAG
GCTAAGGAGAGAGTAGAAAGAGATGAGGCTGAATCACAAATGGGACGAAAGTTATGAGATCGAAGAGGGGTCTTTT
CGGAATTCTCAAACGACATTTCTTGGGGTAGAGTGAAAAGAGGGCTGAATCAAAAAGATGCAATGTATTTGGGGCT
AAAATACAAGAGGGAAATAATACGGTGGCTTGAGACACATCAAAGTTTAAATTTTAGGGCCTTCACACAACTTTCC
CAATTTTAAATTCTTGCTCTCCTAACCAAACGCAAAACAAAAGAAAAAAAACCGAAAAAAAAAGAAGAGAAAAATT
AATAACAGGAAGAGGCCGAAAGAGGCTTTTATTTTCCATTTCACTGGTGAGGGAGGAAGATTAACTGAACCTCCCC
TTTATACCCTCTAGTTATTCTAGCGACACGAACTCAACTCCAGGTGACAACATTCATAGAGACGATAAACCTCATC
ACCTCATATGCACCTTCACAACAATTACCATCTCCTGACAGCAAACCCGCCGGTCCCATATCAGCCCTCTGCATTC
GCCTCCCTTCGAGCTCCCTTCTCAAACCTGTCTTCTCCAAGTTCCAAGATTCACCTTCTTGAACAAGATTCAAGAA
CATG
Kind regards,
John Groenendijk
Wageningen University
The Netherlands
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