<div dir="ltr"><div><div><div><div>Hi Michelle,<br><br></div>The data continues to be available through the Gramene website, see <a href="ftp://ftp.gramene.org/pub/gramene/maizesequence.org/release-5b/working-set/">ftp://ftp.gramene.org/pub/gramene/maizesequence.org/release-5b/working-set/</a><br><br></div>We have a link to the legacy sets from the <a href="http://maizesequence.org">maizesequence.org</a> website in the maize genome page at <a href="http://ensembl.gramene.org/Zea_mays">http://ensembl.gramene.org/Zea_mays</a><br><br></div>Here is a page with Gramene publications (click on PMID to go to the abstract page in PubMed). Probably the most appropriate article is our most recent review (Monaco et al) as it describes the addition of the maize genome (and maize genetic variation sets) into Gramene.<br><br></div>Marcela<br></div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Sep 15, 2014 at 5:17 PM, <a href="mailto:feedback@gramene.org">feedback@gramene.org</a> <span dir="ltr"><<a href="mailto:feedback@gramene.org" target="_blank">feedback@gramene.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">URL : <a href="http://ensembl.gramene.org/Zea_mays/Info/Index" target="_blank">http://ensembl.gramene.org/Zea_mays/Info/Index</a><br>
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Subject : Site Feedback: Citation question<br>
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Name : Michelle Facette<br>
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Email : <a href="mailto:mfacette@ucsd.edu">mfacette@ucsd.edu</a><br>
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Organization: University of California, San Diego<br>
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Comments :<br>
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Hi,<br>
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We're about to submit a manuscript which includes a proteomics dataset. Our database to search for peptides was created using the working gene set, version 5a.59 of the genome, from a now defunct URL (<a href="http://ftp.maizesequence.org/current/working-set/" target="_blank">http://ftp.maizesequence.org/current/working-set/</a>, using file ZmB73_5a_WGS_translations.fasta.gz). Do you have any suggestions for citations other than (or in addition to) the Schnable et al. 2009 paper? One that is specific for that release? Normally I include were we FTP'd the dataset from, but since the URL is now defunct I was wondering if there was an alternative for that particular release. I can find the most recent release, but not earlier ones.<br>
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<a href="http://www.warelab.org/bugs/view.php?id=5032" target="_blank">http://www.warelab.org/bugs/view.php?id=5032</a><br>
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