<div dir="ltr"><div><div>Hi Debkanta,<br><br></div>Unfortunately, the only ways to do this at the moment are like you currently do, in 2 steps, 1) get homologs, and 2) get sequences per species (2 species max if you use the 2nd data set option in Mart), and by scripting the perl API which would involve basic programming skills. I have inquired about making sequences available through the homologs frame in Mart and will let you know if there is any news on this. Thanks,<br><br></div>Marcela<br><div class="gmail_extra"><br clear="all"><div><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px"><font size="1">==<br>Marcela Karey Monaco, PhD</font> <font size="1"><br>Gramene Project Coordinator<br>Cold Spring Harbor Laboratory<br>One Bungtown Road, Williams #5<br>Cold Spring Harbor, NY 11724<br></font></span><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px"><font size="1">Phone: <a value="+15163676998" style="color:rgb(17,85,204)"><span>516</span>-<span>367</span>-<span><span style="background-image:initial;background-color:rgb(255,255,204);color:rgb(34,34,34);background-repeat:initial initial"><span><font size="1">8808</font></span></span></span></a><a value="+15163676998" style="color:rgb(17,85,204)"><span></span></a><br>
Fax: <a value="+15163676851" style="color:rgb(17,85,204)"><span>516</span>-<span>367</span>-6851</a></font></span></div>
<br><div class="gmail_quote">On Mon, Sep 8, 2014 at 4:37 PM, <a href="mailto:feedback@gramene.org">feedback@gramene.org</a> <span dir="ltr"><<a href="mailto:feedback@gramene.org" target="_blank">feedback@gramene.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">URL : <a href="http://gramene.org/" target="_blank">http://gramene.org/</a><br>
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Subject : Site Feedback: How to download the sequences of the orthologous species for a particular gene<br>
<br>
Name : Debkanta Chakraborty<br>
<br>
Email : <a href="mailto:debkanta@uga.edu">debkanta@uga.edu</a><br>
<br>
Organization: University of Georgia<br>
<br>
Comments :<br>
<br>
Hi,<br>
<br>
While I can download all the ortholog set for all genes for 2-3 or more species or even for a particular gene or a particular set of genes by clicking filters -> then genes -> then ID list limit and then selecting few genes of a particular species, what I fail to do is to download the sequences of the orthologous genes for multiple species. In Attributes -> Homologs there is no way that I can also select sequences other than gene stable ID etc and also in ID list limit, I have to give only genes which belong to the species of the main dataset.<br>
<br>
Would highly appreciate any kind of help if you could provide.<br>
<br>
Thanks,<br>
Debkanta<br>
<br>
<a href="http://www.warelab.org/bugs/view.php?id=5025" target="_blank">http://www.warelab.org/bugs/view.php?id=5025</a><br>
<br>
<br>
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