<div dir="ltr"><div>Hi Ted,<br><br>Sorry for the delay in responding to your query. Looks like your query fell through the cracks while I was away on vacation! The SGN website says "Cite SGN using <a class="" href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013765/?tool=pubmed" target="_new"> Bombarely et al, 2011</a>" so that is what I would use to cite any of LycoCyc data.<br>
<br></div><div>Best,<br><br></div>Marcela<br><br></div><div class="gmail_extra"><br clear="all"><div><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px"><font size="1">==<br>
Marcela Karey Monaco, PhD</font> <font size="1"><br>Gramene Project Coordinator<br>Cold Spring Harbor Laboratory<br>One Bungtown Road, Williams #5<br>Cold Spring Harbor, NY 11724<br></font></span><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px"><font size="1">Phone: <a value="+15163676998" style="color:rgb(17,85,204)"><span>516</span>-<span>367</span>-<span><span style="background-image:initial;background-color:rgb(255,255,204);color:rgb(34,34,34);background-repeat:initial initial"><span><font size="1">8808</font></span></span></span></a><a value="+15163676998" style="color:rgb(17,85,204)"><span></span></a><br>
Fax: <a value="+15163676851" style="color:rgb(17,85,204)"><span>516</span>-<span>367</span>-6851</a></font></span></div>
<br><br><div class="gmail_quote">On Tue, Aug 26, 2014 at 5:58 PM, <a href="mailto:feedback@gramene.org">feedback@gramene.org</a> <span dir="ltr"><<a href="mailto:feedback@gramene.org" target="_blank">feedback@gramene.org</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">URL : <a href="http://pathway.gramene.org/LYCO/organism-summary" target="_blank">http://pathway.gramene.org/LYCO/organism-summary</a>?<br>
<br>
Subject : Site Feedback: Citing Lycocyc<br>
<br>
Name : Ted Toal<br>
<br>
Email : <a href="mailto:twtoal@ucdavis.edu">twtoal@ucdavis.edu</a><br>
<br>
Organization: UC Davis<br>
<br>
Comments :<br>
<br>
What is the proper way to cite use of the LycoCyc database? Specifically, I downloaded the file lycocyc3.0.1.dump_pwfids.txt from your download site, to test for pathway overrepresentation in gene lists. Your web site says that the Lycocyc pathway data came from SolGenomics.net, but I can't find anything there either about what to cite.<br>
<br>
Ted Toal, Brady Lab, UC Davis<br>
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<a href="http://www.warelab.org/bugs/view.php?id=5018" target="_blank">http://www.warelab.org/bugs/view.php?id=5018</a><br>
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