<div dir="ltr">Hi,<div><br></div><div>Since there is an active ticket, I may as well point out a minor discrepancy with sucrose synthase nomenclature on the MaizeSequence.org site. To be consistent with the recent literature (<span style="color:rgb(68,68,68);font-size:15px;line-height:21.299999237060547px">Chourey, PS. 2006. MNL. 80:11 </span></div>
<div><a href="http://mnl.maizegdb.org/mnl/80/35chourey.htm" target="_blank" class="" style="font-size:15px;line-height:21.299999237060547px;font-weight:inherit;color:rgb(0,104,207);outline:none">http://mnl.maizegdb.org/mnl/80/35chourey.htm</a>) and the MaizeGDB, these are the correct annotations for the following gene models:</div>
<div><br></div><div><span style="font-size:11pt;line-height:115%;font-family:Calibri,sans-serif">GRMZM2G152908 = ZmSUS1 (and <u>not</u> Zm"SUS2")</span><br></div><div><span style="font-size:11pt;line-height:115%;font-family:Calibri,sans-serif">GRMZM2G318780 = ZmSUS2 (and <u>not</u> just "sucrose synthase").</span><span style="font-size:11pt;line-height:115%;font-family:Calibri,sans-serif"><br>
</span></div><div><span style="font-size:11pt;line-height:115%;font-family:Calibri,sans-serif"><br></span></div><div><span style="font-size:11pt;line-height:115%"><font face="arial, helvetica, sans-serif">I appreciate if this can be rectified to avoid confusion. </font></span></div>
<div><span style="font-size:11pt;line-height:115%"><font face="arial, helvetica, sans-serif"><br></font></span></div><div><span style="font-size:11pt;line-height:115%"><font face="arial, helvetica, sans-serif">thanks very much,</font></span></div>
<div><span style="font-size:11pt;line-height:115%"><font face="arial, helvetica, sans-serif">Subbaiah Chalivendra</font></span></div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Wed, Aug 13, 2014 at 8:55 PM, Subbaiah Chalivendra <span dir="ltr"><<a href="mailto:subbaiahchalivendra@gmail.com" target="_blank">subbaiahchalivendra@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Thank you very much for your reply. Sorry for the false alarm. I find now that it is a sucrose synthase. I made a mistake when I entered the coordinates.You may please cancel the ticket.<span class="HOEnZb"><font color="#888888"><div>
<br></div><div>Subbaiah</div>
</font></span></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><br><div class="gmail_quote">On Wed, Aug 13, 2014 at 4:55 PM, <span dir="ltr"><<a href="mailto:feedback@gramene.org" target="_blank">feedback@gramene.org</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
URL : <a href="http://tools.gramene.org/search?query=GRMZM2G152908" target="_blank">http://tools.gramene.org/search?query=GRMZM2G152908</a><br>
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Subject : Site Feedback: wrongly annotated?<br>
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Name : Subbaiah Chalivendra<br>
<br>
Email : <a href="mailto:schalivendra@lsu.edu" target="_blank">schalivendra@lsu.edu</a><br>
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Organization: none<br>
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Comments :<br>
<br>
Hi,<br>
<br>
I am trying to retrieve coding and upstream sequences for maize sucrose synthase gene ZmSUS1 (gene model: GRMZM2G152908). It is mapped to chr9: 122219990-122227063. When I downloaded the sequence and did a blastx search on NCBI, I am getting alignment with putative transposase or transposon protein sequences rather than sucrose synthase. I appreciate to know whether the region has been mis-annotated. I also want to know how I can obtain the correct SUS1 genomic sequence complete with its upstream regulatory sequence.<br>
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thanks very much,<br>
Subbaiah<br>
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<a href="http://www.warelab.org/bugs/view.php?id=5004" target="_blank">http://www.warelab.org/bugs/view.php?id=5004</a><br>
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</blockquote></div><br></div>
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