<div dir="ltr"><div>Hi Yuxin,<br><br>If you want to see a specific region aligned between <a href="http://ensembl.gramene.org/Oryza_sativa">Nipponbare</a> and <a href="http://ensembl.gramene.org/Oryza_indica">9311</a>, you should go to your region of interest in one of the above species, for example chr1:8,001-18,000 in <i>Oryza sativa Japonica </i>(nipponbare) at <a href="http://ensembl.gramene.org/Oryza_sativa/Location/Multi?r=1:8001-18000">http://ensembl.gramene.org/Oryza_sativa/Location/Multi?r=1:8001-18000</a><br>
</div><div>From this "Location" page, you may choose any of the available options under the "Comparative genomics" menu in the left side bar, such as alignments, region comparison or synteny, and select the other species that you wish you align against (<i>O. sativa Indica</i> or 9311 in this case) from the available options or if you choose "Region comparison", you could do this by clicking on "Select species or regions". <br>
<br></div><div>Please let us know if you need furher assistance with this.<br><br></div><div>Thanks,<br><br></div><div>Marcela<br></div><div><br></div><div><br></div></div><div class="gmail_extra"><br clear="all"><div><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px"><font size="1">==<br>
Marcela Karey Monaco, PhD</font> <font size="1"><br>Gramene Project Coordinator<br>Cold Spring Harbor Laboratory<br>One Bungtown Road, Williams #5<br>Cold Spring Harbor, NY 11724<br></font></span><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px"><font size="1">Phone: <a value="+15163676998" style="color:rgb(17,85,204)"><span>516</span>-<span>367</span>-<span><span style="background-image:initial;background-color:rgb(255,255,204);color:rgb(34,34,34);background-repeat:initial initial"><span><font size="1">8808</font></span></span></span></a><a value="+15163676998" style="color:rgb(17,85,204)"><span></span></a><br>
Fax: <a value="+15163676851" style="color:rgb(17,85,204)"><span>516</span>-<span>367</span>-6851</a></font></span></div>
<br><br><div class="gmail_quote">On Wed, Jul 2, 2014 at 10:58 AM, <a href="mailto:feedback@gramene.org">feedback@gramene.org</a> <span dir="ltr"><<a href="mailto:feedback@gramene.org" target="_blank">feedback@gramene.org</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">URL : <a href="http://tools.gramene.org/feedback" target="_blank">http://tools.gramene.org/feedback</a><br>
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Subject : Site Feedback: 9311 genome<br>
<br>
Name : Yuxin Shi<br>
<br>
Email : <a href="mailto:ys357@cornell.edu">ys357@cornell.edu</a><br>
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Organization: Cornell<br>
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Comments :<br>
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How can I see 9311 genome aligned with Nipponbare?<br>
Thanks,<br>
<br>
<br>
<br>
<a href="http://www.warelab.org/bugs/view.php?id=4984" target="_blank">http://www.warelab.org/bugs/view.php?id=4984</a><br>
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