<div dir="ltr"><div><div>Hi Tom,<br><br>You may get the multiple alignments used to build our gene trees (EMF) from:<br><a href="ftp://ftp.ensemblgenomes.org/pub/plants/release-22/emf/ensembl-compara/">ftp://ftp.ensemblgenomes.org/pub/plants/release-22/emf/ensembl-compara/</a><br>
<br></div>This is a link in the "Comparative genomics" section of every species page in Gramene and Ensembl Plants, but is currently misspelled on our end (sorry, it will be fixed shortly).<br><br></div>Marcela<br>
<br><div class="gmail_extra"><br><div class="gmail_quote">On Thu, May 15, 2014 at 12:19 PM, <a href="mailto:feedback@gramene.org">feedback@gramene.org</a> <span dir="ltr"><<a href="mailto:feedback@gramene.org" target="_blank">feedback@gramene.org</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">URL : <a href="http://www.gramene.org/web-services" target="_blank">http://www.gramene.org/web-services</a><br>
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Subject : Site Feedback: Fetch Genomic Alignments from Gramene<br>
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Name : Tom Kono<br>
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Email : <a href="mailto:konox006@umn.edu">konox006@umn.edu</a><br>
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Organization: University of Minnesota<br>
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Comments :<br>
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Hello,<br>
<br>
We am interested in downloading the DNA-DNA genomic alignments between barley and related species (T. urartu, A. tauschii, B. distachyon, and O. sativa). We notice that through the web interface, we can only fetch a maximum of 5Mb.<br>
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We have looked at the various ways to programmatically fetch data, and tried to connect to the MySQL database. However, we are unable to find a way to download the complete genomic alignments between these species. Is there a way we could get access through this data, either through a SQL database, or an FTP server? Thank you very much.<br>
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<a href="http://www.warelab.org/bugs/view.php?id=4941" target="_blank">http://www.warelab.org/bugs/view.php?id=4941</a><br>
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