<div dir="ltr"><div><div>Hi Rohit,<br><br>The Gramene Mart allows homology information to be exported as attributes,
including the % Identity and '[Species Name] % Identity'. The % identity
is the percentage of amino acids in the currently selected sequence
that are identical in its homologue and '[Species Name] % Identity' is
the percentage of amino acids in the homologue that are identical in the
currently selected sequence. For example, if the species selected is
arabidopsis, and the homologue is in maize, the query sequence is the Arabidopsis protein and the target is the maize protein. % Identity in
this case is the % of the Arabidopsis protein identical to the maize
protein, and "maize % Identity" is the % of the Maize protein identical
to the Arabidopsis protein. These % identities will only be the same if
the length (number of amino acids) of the Arabidopsis and maize proteins
are the same.<br><br></div>Taken and adapted from Ensembl Genomes FAQ.<br><br></div>Marcela<br></div><div class="gmail_extra"><br clear="all"><div><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px"><font size="1">==<br>
Marcela Karey Monaco, PhD</font> <font size="1"><br>Gramene Project Coordinator<br>Cold Spring Harbor Laboratory<br>One Bungtown Road, Williams #5<br>Cold Spring Harbor, NY 11724<br></font></span><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:arial,sans-serif;font-size:13px"><font size="1">Phone: <a value="+15163676998" style="color:rgb(17,85,204)"><span>516</span>-<span>367</span>-<span><span style="background-image:initial;background-color:rgb(255,255,204);color:rgb(34,34,34);background-repeat:initial initial"><span><font size="1">8808</font></span></span></span></a><a value="+15163676998" style="color:rgb(17,85,204)"><span></span></a><br>
Fax: <a value="+15163676851" style="color:rgb(17,85,204)"><span>516</span>-<span>367</span>-6851</a></font></span></div>
<br><br><div class="gmail_quote">On Fri, Mar 21, 2014 at 3:11 AM, <a href="mailto:krohit@live.com">krohit@live.com</a> <span dir="ltr"><<a href="mailto:krohit@live.com" target="_blank">krohit@live.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Rohit Khandelwal (<a href="mailto:krohit@live.com">krohit@live.com</a>) sent a message using the contact form at<br>
<a href="http://www.gramene.org/contact" target="_blank">http://www.gramene.org/contact</a>.<br>
<br>
Hello Sir,<br>
If I search for paralogs, there are two different columns with header "%<br>
identity" and "Paralog % identity". What is the difference between both<br>
terms?<br>
Also, it shows results in a form in which, suppose, if A has % identity 75<br>
and Paralog % identity 77 with B, then B has % identity 77 and Paralog %<br>
identity 75 with A. What does it mean? Please clarify it to me.<br>
Thanks.<br>
<br>
_______________________________________________<br>
Feedback mailing list<br>
<a href="mailto:Feedback@gramene.org">Feedback@gramene.org</a><br>
<a href="http://brie4.cshl.edu/mailman/listinfo/feedback" target="_blank">http://brie4.cshl.edu/mailman/listinfo/feedback</a><br>
</blockquote></div><br></div>