[Feedback] Site Feedback: SNP location on a rice gene

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Subject     : SNP location on a rice gene

Name        : Anil Kumar

Email       : anikng at gmail.com

Organization: University of Nebraska

Comments    : Hi,
I was trying to locate the genomic region of a SNP with base position 22044104. The Locus id of the gene is LOC_Os11g37330. Ensemble search shows that SNP lands after stop codon, but on the second intron. I am not sure how that is possible since that region is expected to be 5UTR. 

(please see the link below)
https://ensembl.gramene.org/Oryza_sativa/Transcript/Exons?db=otherfeatures;g=LOC_Os11g37330;r=11:22040368-22044971;t=LOC_Os11g37330.1

My question is should I consider this region as UTR or second intron?


http://www.warelab.org/bugs/view.php?id=6117