[Feedback] Site Feedback: Help with identification of specific metabolic pathways by overlaying DEGs in S.italica

feedback at gramene.org feedback at gramene.org
Thu Aug 1 06:38:30 EDT 2019


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Subject     : Help with identification of specific metabolic pathways by overlaying DEGs in S.italica

Name        : Tirthankar Bandyopadhyay

Email       : tirthankarlive at live.com

Organization: NIPGR

Comments    : Hi Plant Reactome Researcher.
Greetings!
I work with Setraia italica and wish to identify differentially activated metabolic pathways by providing my own user dataset of DEG (transcripts). The species is fortunately listed in your database and hence such an interest. I am however unable to get any output  with the phytozome IDs the genes (eg. Seita.9G488300)  within  the \"analyse\" section of the \"pathway browser\" . I am therefore wondering if such Phytozome ID format is creating the glitch or there is some other issue. In view of the same,  could you please let me know the right way to provide the input 
so that I may complete my analysis. 

In sincere anticipation.
Tirthankar

http://www.warelab.org/bugs/view.php?id=5855


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