[Feedback] Site Feedback: Mart error retrieving Axiom 35K SNP data
feedback at gramene.org
feedback at gramene.org
Wed Apr 17 12:40:14 EDT 2019
URL : http://ensembl-dev.gramene.org/biomart/martview/77f48701342a1d7c82b2ec16703b3aaa/77f48701342a1d7c82b2ec16703b3aaa
Subject : Mart error retrieving Axiom 35K SNP data
Name : Marcela Tello-Ruiz
Email : mmonaco at cshl.edu
Organization: Cold Spring Harbor Laboratory
Comments : Parameters used:
Dataset
Triticum aestivum Short Variants (SNPs and indels excluding flagged variants) (IWGSC)
Filters
Variant set name : Axiom 820k
Variant consequence : stop_gained
Chromosome/scaffold : 1A
Attributes
Variant name
Variant source
Variant Set Name
Gene stable ID
SIFT prediction
SIFT score
Global minor allele count (all individuals)
Global minor allele frequency (all individuals)
Error:
Serious Error: Could not connect to mysql database ontology_mart_93: DBI connect('database=ontology_mart_93;host=colden.cshl.edu;port=3306','gramene_web',...) failed: Unknown database 'ontology_mart_93' at /usr/local/ensembl-95/biomart-perl/lib/BioMart/Configuration/DBLocation.pm line 98.
ERROR: caught BioMart::Exception::Database: Could not connect to mysql database ontology_mart_93: DBI connect('database=ontology_mart_93;host=colden.cshl.edu;port=3306','gramene_web',...) failed: Unknown database 'ontology_mart_93' at /usr/local/ensembl-95/biomart-perl/lib/BioMart/Configuration/DBLocation.pm line 98.
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Stacktrace:
Exception::Class::Base::throw /usr/local/ensembl-95/biomart-perl/lib/BioMart/Configuration/DBLocation.pm:105
BioMart::Configuration::DBLocation::openConnection /usr/local/ensembl-95/biomart-perl/lib/BioMart/DatasetI.pm:224
BioMart::DatasetI::_getDBH /usr/local/ensembl-95/biomart-perl/lib/BioMart/Dataset/TableSet.pm:231
BioMart::Dataset::TableSet::_fillAttributeTableWith /usr/local/ensembl-95/biomart-perl/lib/BioMart/Dataset/TableSet.pm:124
BioMart::Dataset::TableSet::_getResultTable /usr/local/ensembl-95/biomart-perl/lib/BioMart/DatasetI.pm:1170
BioMart::DatasetI::getResultTable /usr/local/ensembl-95/biomart-perl/lib/BioMart/QueryRunner.pm:630
BioMart::QueryRunner::_processPath /usr/local/ensembl-95/biomart-perl/lib/BioMart/QueryRunner.pm:374
BioMart::QueryRunner::_getResultTable /usr/local/ensembl-95/biomart-perl/lib/BioMart/QueryRunner.pm:194
BioMart::QueryRunner::execute /usr/local/ensembl-95/biomart-perl/lib/BioMart/Web.pm:2455
(eval) /usr/local/ensembl-95/biomart-perl/lib/BioMart/Web.pm:2207
BioMart::Web::handle_request /usr/local/ensembl-95/ensembl-webcode/biomart-perl/cgi-bin/martview:100
(eval) /usr/local/ensembl-95/ensembl-webcode/biomart-perl/cgi-bin/martview:99
ModPerl::ROOT::ModPerl::Registry::usr_local_ensembl_2d95_ensembl_2dwebcode_biomart_2dperl_cgi_2dbin_martview::handler /usr/local/lib/perl5/site_perl/5.16.1/x86_64-linux/ModPerl/RegistryCooker.pm:206
(eval) /usr/local/lib/perl5/site_perl/5.16.1/x86_64-linux/ModPerl/RegistryCooker.pm:206
ModPerl::RegistryCooker::run /usr/local/lib/perl5/site_perl/5.16.1/x86_64-linux/ModPerl/RegistryCooker.pm:172
ModPerl::RegistryCooker::default_handler /usr/local/lib/perl5/site_perl/5.16.1/x86_64-linux/ModPerl/Registry.pm:31
ModPerl::Registry::handler -e:0
(eval) -e:0
http://www.warelab.org/bugs/view.php?id=5819
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