[Feedback] Site Feedback: AGPv1 to AGPv2

Wed Mar 21 13:41:06 EDT 2018

Dear Zuebo,

Unfortunately our assembly converter tool only allows you to convert genomic coordinates between those three assemblies (V2, V3, and V4) but not V1.  Have you checked maizeGDB? They used to have genome browsers for older assemblies. Else I can only think of using the LiftOver tool from the UCSC browser but that would be a bit more involved.

Marcela

> On Mar 21, 2018, at 3:48 PM, Xuebo Zhao <xuebozhao at genetics.ac.cn> wrote:
> 
> I don't understand what this URL means.
> Can you help me convert maize AGPv1 to AGPv2?
> 
> On 3/21/18, 10:07 PM, "olson at gorgonzola.cshl.edu on behalf of feedback at gramene.org" <olson at gorgonzola.cshl.edu on behalf of feedback at gramene.org> wrote:
> 
>    URL         : https://urldefense.proofpoint.com/v2/url?u=http-3A__ensembl.gramene.org_Zea-5Fmays_Tools_AssemblyConverter-3Fdb-3Dcore&d=DwIGaQ&c=mkpgQs82XaCKIwNV8b32dmVOmERqJe4bBOtF0CetP9Y&r=_Zc33CcBZfVwbQ1K4e-3NQ&m=fjZTylK9q8-FJRB0SxIuIBgmKIo0xv0a_sdNIEkjE30&s=x3Eh1tl9b3nqRE8TbrSa4Ah6QCWJsuJ7eLUFDAq_E8k&e=
> 
>    Subject     : AGPv1 to AGPv2
> 
>    Name        : Xuebo Zhao
> 
>    Email       : xuebozhao at genetics.ac.cn
> 
>    Organization: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
> 
>    Comments    : I have a AGPv1 bed file and I don't know how to convert AGPv2.
>    I find it only convert from AGPv2,AGPv3 and AGPv4.
>    What should I do to convert AGPv1 to AGPv2?
> 
>    https://urldefense.proofpoint.com/v2/url?u=http-3A__www.warelab.org_bugs_view.php-3Fid-3D5712&d=DwIGaQ&c=mkpgQs82XaCKIwNV8b32dmVOmERqJe4bBOtF0CetP9Y&r=_Zc33CcBZfVwbQ1K4e-3NQ&m=fjZTylK9q8-FJRB0SxIuIBgmKIo0xv0a_sdNIEkjE30&s=D-YW27jceVbdxLI8DQwcD5aydiOkKNlXWv2kXBaOSDk&e=
> 
> 
> 
> 
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