[Feedback] Site Feedback: AJAX error for variant table link for several species (new and some updated) from Location view

[feedback at gramene.org]

URL         : http://ensembl-dev.gramene.org/Vigna_angularis/Location/Variant/Table?align=9647;db=core;r=2:24191478-24193326;r1=3:23218982-23220830:1;r2=14:1982764-1984612:1;r3=1:40967892-40969740:1;s1=Arabidopsis_thaliana;s2=Vitis_vinifera;s3=Oryza_sativa

Subject     : AJAX error for variant table link for several species (new and some updated) from Location view

Name        : Marcela 

Email       : mmonaco at cshl.edu

Organization: Cold Spring Harbor Laboratory

Comments    : AJAX error - Runtime Error in component \"EnsEMBL::Web::Component::Location::VariationTable [content]\"

Function EnsEMBL::Web::Component::Location::VariationTable fails to execute due to the following error:

	Uncaught exception 'DBException' with message 'Can't call method \"get_VariationFeatureAdaptor\" on an undefined
	... value at /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/DBHub.pm line 92.
	'
	  Thrown by EnsEMBL::Web::DBHub::get_adaptor in module EnsEMBL::Web::Component::Location::VariationTable at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/Component/Location/VariationTable.pm on line 402
	  Called by EnsEMBL::Web::Component::Location::VariationTable::_get_variation_features in module
	... EnsEMBL::Web::Component::Location::VariationTable at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/Component/Location/VariationTable.pm on line 317
	  Called by EnsEMBL::Web::Component::Location::VariationTable::variation_table in module
	... EnsEMBL::Web::Component::Location::VariationTable at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/Component/Location/VariationTable.pm on line 48
	  Called by EnsEMBL::Web::Component::Location::VariationTable::table_content in module
	... EnsEMBL::Web::NewTable::Phase at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/NewTable/Phase.pm on line 196
	  Called by EnsEMBL::Web::NewTable::Phase::go_data in module EnsEMBL::Web::Memoize at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/Memoize.pm on line 181
	  Called by EnsEMBL::Web::Memoize::_memoized in module EnsEMBL::Web::Memoize at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/Memoize.pm on line 197
	  Called by EnsEMBL::Web::Memoize::__ANON__ in module EnsEMBL::Web::NewTable::Phase at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/NewTable/Phase.pm on line 218
	  Called by EnsEMBL::Web::NewTable::Phase::go in module EnsEMBL::Web::NewTable::Callback at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/NewTable/Callback.pm on line 168
	  Called by EnsEMBL::Web::NewTable::Callback::run_phase in module EnsEMBL::Web::NewTable::Callback at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/NewTable/Callback.pm on line 210
	  Called by EnsEMBL::Web::NewTable::Callback::newtable_data_request in module EnsEMBL::Web::NewTable::Callback
	... at /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/NewTable/Callback.pm on line 94
	  Called by EnsEMBL::Web::NewTable::Callback::preload in module EnsEMBL::Web::NewTable::NewTable at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/NewTable/NewTable.pm on line 92
	  Called by EnsEMBL::Web::NewTable::NewTable::render in module
	... EnsEMBL::Web::Component::Location::VariationTable at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/Component/Location/VariationTable.pm on line 67
	  Called by EnsEMBL::Web::Component::Location::VariationTable::content in module EnsEMBL::Web::Component at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/Component.pm on line 242
	  Called by EnsEMBL::Web::Component::get_content in module EnsEMBL::Web::Document::Panel at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/Document/Panel.pm on line 436
	  Called by (eval) in module EnsEMBL::Web::Document::Panel at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/Document/Panel.pm on line 433
	  Called by EnsEMBL::Web::Document::Panel::component_content in module EnsEMBL::Web::Document::Panel::Ajax at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/Document/Panel/Ajax.pm on line 26
	  Called by EnsEMBL::Web::Document::Panel::Ajax::content in module EnsEMBL::Web::Document::Element::Content at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/Document/Element/Content.pm on line 142
	  Called by EnsEMBL::Web::Document::Element::Content::content in module EnsEMBL::Web::Controller at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/Controller.pm on line 468
	  Called by EnsEMBL::Web::Controller::render_page in module EnsEMBL::Web::Controller::Component at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/Controller/Component.pm on line 62
	  Called by EnsEMBL::Web::Controller::Component::init in module EnsEMBL::Web::Controller at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/Controller.pm on line 112
	  Called by EnsEMBL::Web::Controller::process in module EnsEMBL::Web::Apache::SpeciesHandler at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/Apache/SpeciesHandler.pm on line 102
	  Called by EnsEMBL::Web::Apache::SpeciesHandler::handler in module EnsEMBL::Web::Apache::Handlers at
	... /usr/local/ensembl-93/ensembl-webcode/modules/EnsEMBL/Web/Apache/Handlers.pm on line 505
	  Called by EnsEMBL::Web::Apache::Handlers::handler in module main at -e on line 0
	  Called by (eval) in module main at -e on line 0
      

http://www.warelab.org/bugs/view.php?id=5743