[Feedback] Site Feedback: Zea mays gene ontology annotation

feedback at gramene.org feedback at gramene.org
Mon Sep 18 11:08:23 EDT 2017


URL         : http://ensembl.gramene.org/Zea_mays/Info/Index

Subject     : Zea mays gene ontology annotation

Name        : Brian Mack

Email       : brian.mack at ars.usda.gov

Organization: USDA

Comments    : Hi,
I am using the gene structure annotation provided at ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/gff3/zea_mays/Zea_mays.AGPv4.36.gff3.gz which has ids in the form of \"Zm00001d027230\" and I was attempting to use the gene ontology annotation provided at ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/ontology/go/go_ensembl_zea_mays.gaf which uses ids like \"GRMZM2G360873\". Are these referring to the same gene and is there an easy way to convert between these two ids. Or if the genes are different is there an updated gene ontology annotation that I should be using?

Thanks,
Brian

http://www.warelab.org/bugs/view.php?id=5679


More information about the Feedback mailing list