[Feedback] Site Feedback: Zea mays gene ontology annotation
feedback at gramene.org
feedback at gramene.org
Mon Sep 18 11:08:23 EDT 2017
URL : http://ensembl.gramene.org/Zea_mays/Info/Index
Subject : Zea mays gene ontology annotation
Name : Brian Mack
Email : brian.mack at ars.usda.gov
Organization: USDA
Comments : Hi,
I am using the gene structure annotation provided at ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/gff3/zea_mays/Zea_mays.AGPv4.36.gff3.gz which has ids in the form of \"Zm00001d027230\" and I was attempting to use the gene ontology annotation provided at ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/ontology/go/go_ensembl_zea_mays.gaf which uses ids like \"GRMZM2G360873\". Are these referring to the same gene and is there an easy way to convert between these two ids. Or if the genes are different is there an updated gene ontology annotation that I should be using?
Thanks,
Brian
http://www.warelab.org/bugs/view.php?id=5679
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