[Feedback] Site Feedback: Old barley gene IDs

[Marcela K. Monaco]

Hi Pankaj,

This is the tool to do that, but it's not working:

http://plants.ensembl.org/Hordeum_vulgare/Tools/IDMapper?db=core

Marcela

On Tue, Nov 14, 2017 at 10:50 PM, feedback at gramene.org <feedback at gramene.org
> wrote:

> URL         : https://urldefense.proofpoint.com/v2/url?u=http-3A__ensembl.
> gramene.org_Multi_Search_Results-3Fspecies-3Dall-3Bidx-
> 3D-3Bq-3DMLOC-5F10001-3Bsite-3Densemblunit&d=DwIBaQ&c=
> mkpgQs82XaCKIwNV8b32dmVOmERqJe4bBOtF0CetP9Y&r=_Zc33CcBZfVwbQ1K4e-3NQ&m=
> ooGbupAOc7rru_lxOX8MJpyR48_tkt_gxm2pKBarWTg&s=
> yZM9zQCwIYpIEjlqHOOvPCOz6U5okfYwctPsc_RIwaU&e=
>
> Subject     : Old barley gene IDs
>
> Name        : Pankaj
>
> Email       : jaiswalp at science.oregonstate.edu
>
> Organization: OSU
>
> Comments    : We have DGE data from the previous assembly and trying to
> convert to the new version. We managed to do it using the GFFs we have but
> in the DGE set, we have old gene IDs like MLOC_10001. I can search them on
> Gramene (see the reference URL), but I can't get a mapping file anywhere.
> Can you help
>
> https://urldefense.proofpoint.com/v2/url?u=http-3A__www.
> warelab.org_bugs_view.php-3Fid-3D5691&d=DwIBaQ&c=
> mkpgQs82XaCKIwNV8b32dmVOmERqJe4bBOtF0CetP9Y&r=_Zc33CcBZfVwbQ1K4e-3NQ&m=
> ooGbupAOc7rru_lxOX8MJpyR48_tkt_gxm2pKBarWTg&s=L_
> QjO4Z3RQs7HJw3Y8fFK7VUInovVK1ayJP0QWfuxiU&e=
>



-- 

Marcela Karey Tello-Ruiz, PhD
Gramene Project Manager and Education, Outreach & Training Lead
Cold Spring Harbor Laboratory
One Bungtown Road, Williams #5
Cold Spring Harbor, NY 11724
Phone: 516-367-8808
Fax: 516-367-6851
E-mail: telloruiz at cshl.edu
---
Facebook: https://www.facebook.com/Gramene <telloruiz at cshl.edu>
Twitter: https://twitter.com/GrameneDatabase
Blog: http://news.gramene.org/blog <telloruiz at cshl.edu>
<telloruiz at cshl.edu>
YouTube: https://goo.gl/ln9RLD
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://brie4.cshl.edu/pipermail/feedback/attachments/20171115/dafbf750/attachment.html>