[Feedback] Site Feedback: maize assembly typo

feedback at gramene.org feedback at gramene.org
Fri Jun 16 17:08:55 EDT 2017


URL         : http://ensembl.gramene.org/Zea_mays/Info/Annotation/

Subject     : maize assembly typo

Name        : Marcela

Email       : mmonaco at cshl.edu

Organization: CSHL

Comments    : From: Margaret Woodhouse <info at margaretwoodhouse.com<mailto:info at margaretwoodhouse.com>>
Date: Friday, June 16, 2017 at 3:14 PM
To: Doreen Ware <ware at cshl.edu<mailto:ware at cshl.edu>>, \"Jiao, Yinping\" <yjiao at cshl.edu<mailto:yjiao at cshl.edu>>
Subject: Typo at Ensembl

Hi, Doreen and Yinping:

I think there is a typo in the Ensembl B73 v4 page:

http://plants.ensembl.org/Zea_mays/Info/Annotation/<https://urldefense.proofpoint.com/v2/url?u=http-3A__plants.ensembl.org_Zea-5Fmays_Info_Annotation_&d=DwMFAg&c=mkpgQs82XaCKIwNV8b32dmVOmERqJe4bBOtF0CetP9Y&r=o9bHzY93KcMdckSgeLYlVQ&m=0suy39ebCuFD_TNDS4t5bgtsqB6lo9Gxb1uAcnwuN5Q&s=GuX_Sjz6VPS9zOLJLfZ0wIxYGfMLXtJ2WhKAqfWPGOo&e=>

To the right it says

\"AGPv4 (Zm-B73-REFERENCE-GRAMENE-4.0), INSDC Assembly GCA_000005015.6\"

I am pretty sure it is supposed to say

GCA_000005005.6

Since that is the name of v4 in NCBI:

ftp://ftp.ncbi.nih.gov/genomes/genbank/plant/Zea_mays/all_assembly_versions/GCA_000005005.6_B73_RefGen_v4/<https://urldefense.proofpoint.com/v2/url?u=ftp-3A__ftp.ncbi.nih.gov_genomes_genbank_plant_Zea-5Fmays_all-5Fassembly-5Fversions_GCA-5F000005005.6-5FB73-5FRefGen-5Fv4_&d=DwMFAg&c=mkpgQs82XaCKIwNV8b32dmVOmERqJe4bBOtF0CetP9Y&r=o9bHzY93KcMdckSgeLYlVQ&m=0suy39ebCuFD_TNDS4t5bgtsqB6lo9Gxb1uAcnwuN5Q&s=vmWCeh1MrIKt-VKa3NqMp9No-oLQg6b7ry3bIiQEynM&e=>

Thanks!

Maggie

http://www.warelab.org/bugs/view.php?id=5635


More information about the Feedback mailing list