[Feedback] Site Feedback: Problem with converter tool B73 v2 to v4

[feedback at gramene.org]

URL         : http://ensembl.gramene.org/Oryza_sativa/Tools/AssemblyConverter/View?db=core;tl=wzKMlPA6rvLL19eA-128496

Subject     : Site Feedback: Problem with converter tool B73 v2 to v4

Name        : Eva Bauer

Email       : e.bauer at tum.de

Organization: Technical University of Munich

Comments    : 

Dear Helpdesk Team,

I have a problem with conversion of B73 v2 to v4 positions. The same problem occurred some weeks ago and I think I used the "report to helpdesk" tool, but the error persists.

My input data are in the following format (bed):

chr7 110755029 110755029
chr7 173495749 173495749

Is it a problem with the file format? I also tried with different start/stop positions (just added +1 to the stop position). But it still fails and gives an error message (copied below).

I would be grateful for any help with this issue.

Best regards
Eva


Error: Uncaught exception 'HiveException' with message 'Output file empty (zero bytes).' Thrown by EnsEMBL::Web::RunnableDB::AssemblyConverter::run in module Bio::EnsEMBL::Hive::Process at /usr/local/ensembl-86/ensembl-hive/modules/Bio/EnsEMBL/Hive/Process.pm on line 140 Called by (eval) in module Bio::EnsEMBL::Hive::Process at /usr/local/ensembl-86/ensembl-hive/modules/Bio/EnsEMBL/Hive/Process.pm on line 127 Called by Bio::EnsEMBL::Hive::Process::life_cycle in module Bio::EnsEMBL::Hive::Worker at /usr/local/ensembl-86/ensembl-hive/modules/Bio/EnsEMBL/Hive/Worker.pm on line 688 Called by (eval) in module Bio::EnsEMBL::Hive::Worker at /usr/local/ensembl-86/ensembl-hive/modules/Bio/EnsEMBL/Hive/Worker.pm on line 674 Called by Bio::EnsEMBL::Hive::Worker::run_one_batch in module Bio::EnsEMBL::Hive::Worker at /usr/local/ensembl-86/ensembl-hive/modules/Bio/EnsEMBL/Hive/Worker.pm on line 526 Called by Bio::EnsEMBL::Hive::Worker::run in module Bio::EnsEMBL::Hive::Scripts::RunWorker at /usr/local/ensembl-86/ensembl-hive/modules/Bio/EnsEMBL/Hive/Scripts/RunWorker.pm on line 85 Called by (eval) in module Bio::EnsEMBL::Hive::Scripts::RunWorker at /usr/local/ensembl-86/ensembl-hive/modules/Bio/EnsEMBL/Hive/Scripts/RunWorker.pm on line 94 Called by Bio::EnsEMBL::Hive::Scripts::RunWorker::runWorker in module main at /usr/local/ensembl-86/ensembl-hive/scripts/runWorker.pl on line 135 Called by main::main in module main at /usr/local/ensembl-86/ensembl-hive/scripts/runWorker.pl on line 23

http://www.warelab.org/bugs/view.php?id=5580