[Feedback] Site Feedback: Solanum lycopersicum annotation of Chromosome "00"

feedback at gramene.org feedback at gramene.org
Wed May 25 12:56:18 EDT 2016


URL         : http://ensembl.gramene.org/info/website/index.html

Subject     : Site Feedback: Solanum lycopersicum annotation of Chromosome "00"

Name        : Elizabeth French

Email       : eeckhard at purdue.edu

Organization: Purdue University

Comments    : 

Hello,
I am a  graduate student at Purdue trying to analyze RNAseq data from S. lycopersicum. I downloaded the GO annotations from the BioMart on the ensembl site, but the BioMart does not include genes that are not mapped to a chromosome (Solyc00g), though a number of them have been characterized and have GO terms associated with them (based on Panther and Solgenomics annotation data). Is there a reason these are not available to download from BioMart or could they be added?
Thank you,


http://www.warelab.org/bugs/view.php?id=5408




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