[Feedback] Site Feedback: This is different result in biomart

feedback at gramene.org feedback at gramene.org
Mon Mar 28 16:15:36 EDT 2016


URL         : http://ensembl.gramene.org/genome_browser/index.html

Subject     : Site Feedback: This is different result in biomart 

Name        : Young Koung Lee

Email       : leeyk at cshl.edu

Organization: CSHL

Comments    : 

Whenn I use between http://dev.gramene.org/ and http://ensembl.gramene.org/

In biomart: Oryza sativa Japonica variations (IRGSP-1.0 (IRGSP-1.0)) 

dev: 27869011 / 27869011 
gramene: 5512746 / 5512746 

new filter in dev
general variation filters 

Variation source 
variation ID
distance to transcript

ensembl.grammene.org

Variation source
Variation ID
Variation synonym source
Variation synonym ID
Distance to transcript

In dev: disappear Variation synonym source
variation source are different
dev:  EVA, gramene: dbSNP

http://www.warelab.org/bugs/view.php?id=5366




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