[Feedback] Site Feedback: Multi-species view incorrect ortholog links

feedback at gramene.org feedback at gramene.org
Fri Jun 24 12:49:04 EDT 2016


URL         : http://ensembl.gramene.org/Arabidopsis_thaliana/Location/Multi?db=core;g=AT5G42080;r=5:16787021-16833135;r1=8:42000095-42391852:-1;s1=Medicago_truncatula

Subject     : Site Feedback: Multi-species view incorrect ortholog links

Name        : Josh

Email       : steinj at cshl.edu

Organization: CSHL

Comments    : 

This view looks wrong in Gramene (ortholog links are connecting genes that are not aligned at DNA level):
http://ensembl.gramene.org/Arabidopsis_thaliana/Location/Multi?db=core;g=AT5G42080;r=5:16787021-16833135;r1=8:42000095-42391852:-1;s1=Medicago_truncatula

The view looks fine in Ensembl plants:
http://plants.ensembl.org/Arabidopsis_thaliana/Location/Multi?db=core;g=AT5G42080;r=5:16787021-16833135;r1=8:42000095-42391852:-1;s1=Medicago_truncatula

I also noticed this yesterday when looking at rice/maize multi-species views.

http://www.warelab.org/bugs/view.php?id=5421




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