[Feedback] Site Feedback: maize v4 problem gene model

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URL         : http://maizev4.gramene.org/Zea_mays4m/Gene/Compara_Tree?db=core;g=Zm00001d000082;r=B73V4_ctg31:540373-541245;t=Zm00001d000082_T001

Subject     : Site Feedback: maize v4 problem gene model

Name        : Josh Stein

Email       : steinj at cshl.edu

Organization: cshl

Comments    : 

Sharon can you look at this?

The translation is only 12 aa, yet it was incorporated into a tree and has an InterPro domain which is usually found in proteins > 250 aa.  The tree multiple sequence alignment shows that there are more than 12 aa.  The fasta protein dump shared with collaborators also has only 12 aa (/sonas-hs/ware/hpc/data/yjiao/B73v4/zea_mays4m_Maker_gene.fasta).

Thanks, Josh


http://www.warelab.org/bugs/view.php?id=5426