[Feedback] Site Feedback: assembly converter failed with mock GFF file

[feedback at gramene.org]

URL         : http://dev.gramene.org/Oryza_sativa/Tools/AssemblyConverter/Edit?db=core;tl=NmG34XfZBG6KqX5w-205733

Subject     : Site Feedback: assembly converter failed with mock GFF file

Name        : Marcela & Lifang

Email       : zhangl at cshl.edu

Organization: 

Comments    : 

Here is the data we use for GFF.  Taken from the GFF3 example in http://dev.gramene.org/info/website/upload/gff3.html (except changed the reference contig ids to chr numbers 1, 2 or 3:

##gff-version 3
1 . mRNA            1300  9000  .  +  .  ID=mrna0001;Name=sonichedgehog
2 . exon            1300  1500  .  +  .  ID=exon00001;Parent=mrna0001
3 . exon            1050  1500  .  +  .  ID=exon00002;Parent=mrna0001
1 . exon            3000  3902  .  +  .  ID=exon00003;Parent=mrna0001
2 . exon            5000  5500  .  +  .  ID=exon00004;Parent=mrna0001
3 . exon            7000  9000  .  +  .  ID=exon00005;Parent=mrna0001

http://www.warelab.org/bugs/view.php?id=5379