[Feedback] Site Feedback: RNA seq data
feedback at gramene.org
feedback at gramene.org
Thu May 28 15:30:36 EDT 2015
URL : http://www.gramene.org/node/196
Subject : Site Feedback: RNA seq data
Name : Rashmi
Email : rsjain at ucdavis.edu
Organization: UC-Davis
Comments :
We have RNA Seq data for Rice, we want to upload that to Gramene to make that publicly available.
Please let me know how can we do that?
Thanks
Error creating Mantis ticket:
Error Server: Error Type: ,
Error Description:
preg_replace(): The /e modifier is deprecated, use preg_replace_callback instead,
Stack Trace:
class.phpmailer.php L1741 preg_replace(<string>'/([\\000-\\011\\013\\014\\016-\\037\\075\\077\\137\\177-\\377])/e', <string>'\'=\'.sprintf(\'%02X\', ord(\'\\1\'))', <string>'[Public Gramene Feedback 0005190]: Gene name (Symbol): There are no loci linked to this gene model.')
class.phpmailer.php L1571 EncodeQ(<string>'[Public Gramene Feedback 0005190]: Gene name (Symbol): There are no loci linked to this gene model.', <string>'text')
class.phpmailer.php L1129 EncodeHeader(<string>'[Public Gramene Feedback 0005190]: Gene name (Symbol): There are no loci linked to this gene model.')
class.phpmailer.php L558 CreateHeader()
email_api.php L994 Send()
email_api.php L849 email_send(<Object><EmailData> ( [email] => 'gramene-dev at gramene.org', [subject] => '[Public Gramene Feedback 0005190]: Gene name (Symbol): There are no loci linked to this gene model.', [body] => 'The following issue has been SUBMITTED.
======================================================================
http://www.warelab.org/bugs/view.php?id=5190
======================================================================
Reported By: Gramene Feedback
Assigned To:
======================================================================
Project: Public Gramene Feedback
Issue ID: 5190
Category: Uncategorized
Reproducibility: have not tried
Severity: minor
Priority: normal
Status: new
======================================================================
Date Submitted: 2015-05-28 06:58 EDT
Last Modified: 2015-05-28 06:58 EDT
======================================================================
Summary: Gene name (Symbol): There are no loci linked to this gene model.
Description:
URL : http://archive.gramene.org/db/searches/quick_search?search_for=gene name
Subject : Site Feedback: Gene name (Symbol): There are no loci linked to this gene model.
Name : Boudewijn
Email : maartelore.bultdeck at gmail.com
Organization:
Comments :
For some genes, there is the annotation for the gene name that there are no loci linked to this gene model. What does this mean?
======================================================================
Issue History
Date Modified Username Field Change
======================================================================
2015-05-28 06:58 Gramene FeedbackNew Issue
======================================================================', [metadata] => <Array> { ['headers'] => <Array> { ['keywords'] => '[Public Gramene Feedback] Uncategorized', ['Message-ID'] => '99bf1ca5f6fb09d3503163e9de99d314' }, ['priority'] => 3, ['charset'] => 'utf-8', ['hostname'] => 'bivouac.cshl.edu' }, [email_id] => '24959', [submitted] => '1432810712' ))
email_api.php L575 email_send_all()
email_api.php L719 email_generic(<string>'5191', <string>'new', <string>'email_notification_title_for_action_bug_submitted')
mc_issue_api.php L596 email_new_bug(<string>'5191')
UnknownFile L? mc_issue_add(<string>'gramene_feedback', <string>'oh.rye.zuh', <Array> { ['summary'] => 'RNA seq data', ['description'] => 'URL : http://www.gramene.org/node/196
Subject : Site Feedback: RNA seq data
Name : Rashmi
Email : rsjain at ucdavis.edu
Organization: UC-Davis
Comments :
We have RNA Seq data for Rice, we want to upload that to Gramene to make that publicly available.
Please let me know how can we do that?
Thanks', ['category'] => 'Uncategorized', ['project'] => <Array> { ['subprojects'] => <Array> { }, ['file_path'] => '', ['access_min'] => <Array> { ['name'] => 'viewer', ['id'] => 10 }, ['view_state'] => <Array> { ['name'] => 'public', ['id'] => 10 }, ['status'] => <Array> { ['name'] => 'development', ['id'] => 10 }, ['name'] => 'Public Gramene Feedback', ['id'] => 15, ['description'] => 'Issues automatically generated by the Gramene website feedback mechanism.', ['enabled'] => 1 } })
nusoap.php L4002 call_user_func_array(<string>'mc_issue_add', <Array> { [0] => 'gramene_feedback', [1] => 'oh.rye.zuh', [2] => <Array> { ['summary'] => 'RNA seq data', ['description'] => 'URL : http://www.gramene.org/node/196
Subject : Site Feedback: RNA seq data
Name : Rashmi
Email : rsjain at ucdavis.edu
Organization: UC-Davis
Comments :
We have RNA Seq data for Rice, we want to upload that to Gramene to make that publicly available.
Please let me know how can we do that?
Thanks', ['category'] => 'Uncategorized', ['project'] => <Array> { ['subprojects'] => <Array> { }, ['file_path'] => '', ['access_min'] => <Array> { ['name'] => 'viewer', ['id'] => 10 }, ['view_state'] => <Array> { ['name'] => 'public', ['id'] => 10 }, ['status'] => <Array> { ['name'] => 'development', ['id'] => 10 }, ['name'] => 'Public Gramene Feedback', ['id'] => 15, ['description'] => 'Issues automatically generated by the Gramene website feedback mechanism.', ['enabled'] => 1 } } })
nusoap.php L3691 invoke_method()
mantisconnect.php L1393 service(<string>'<?xml version="1.0" encoding="UTF-8"?><soap:Envelope soap:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/" xmlns:namesp2="http://namespaces.soaplite.com/perl" xmlns:soap="http://schemas.xmlsoap.org/soap/envelope/" xmlns:soapenc="http://schemas.xmlsoap.org/soap/encoding/" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"><soap:Body><mc_issue_add xmlns="http://futureware.biz/mantisconnect"><c-gensym24 xsi:type="xsd:string">gramene_feedback</c-gensym24><c-gensym26 xsi:type="xsd:string">oh.rye.zuh</c-gensym26><IssueData xsi:type="namesp2:IssueData"><summary xsi:type="xsd:string">RNA seq data</summary><description xsi:type="xsd:string">URL : http://www.gramene.org/node/196
Subject : Site Feedback: RNA seq data
Name : Rashmi
Email : rsjain at ucdavis.edu
Organization: UC-Davis
Comments :
We have RNA Seq data for Rice, we want to upload that to Gramene to make that publicly available. 
Please let me know how can we do that?

Thanks</description><category xsi:type="xsd:string">Uncategorized</category><project xsi:type="namesp2:ProjectData"><subprojects soapenc:arrayType="xsd:anyType[0]" xsi:type="soapenc:Array" /><file_path xsi:type="xsd:string" /><access_min xsi:type="namesp2:ObjectRef"><name xsi:type="xsd:string">viewer</name><id xsi:type="xsd:int">10</id></access_min><view_state xsi:type="namesp2:ObjectRef"><name xsi:type="xsd:string">public</name><id xsi:type="xsd:int">10</id></view_state><status xsi:type="namesp2:ObjectRef"><name xsi:type="xsd:string">development</name><id xsi:type="xsd:int">10</id></status><name xsi:type="xsd:string">Public Gramene Feedback</name><id xsi:type="xsd:int">15</id><description xsi:type="xsd:string">Issues automatically generated by the Gramene website feedback mechanism.</description><enabled xsi:type="xsd:int">1</enabled></project></IssueData></mc_issue_add></soap:Body></soap:Envelope>')
for method mc_issue_add at /usr/local/gramene/gramene-web-tools/script/../lib/Grm/Web/Feedback.pm line 161.
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