[Feedback] Fwd: Site Feedback: linke to balrey genome sequence

[Marcela K. Monaco]

Hi Dan,

About the assembly data for barley, I understand that this is more like a
gene-ome and not a true assembly...  But why is the user refering to
contigs?  I see a single pseudomolecule per file (with lost of Ns
nonetheless)...

Also rm = repeat masked, and sm = ?

Thanks,

Marcela

---------- Forwarded message ----------
From: feedback at gramene.org <feedback at gramene.org>
Date: Tue, Mar 10, 2015 at 3:36 PM
Subject: [Feedback] Site Feedback: linke to balrey genome sequence
To: "feedback at gramene.org" <feedback at gramene.org>
Cc: "Steve Larson [USDA ARS]" <Steve.Larson at ars.usda.gov>


URL         : http://ensembl.gramene.org/Hordeum_vulgare/Info/Index

Subject     : Site Feedback: linke to balrey genome sequence

Name        : Steve Larson

Email       : Steve.Larson at ars.usda.gov

Organization: USDA ARS

Comments    :

I think the link to the barley genome sequence assembly
(File:Hordeum_vulgare.082214v1.25.dna.genome.fa.gz)

at

Index of
ftp://ftp.ensemblgenomes.org/pub/plants/release-25/fasta/hordeum_vulgare/dna/

is incorrect. This believe this file should contain about 20
psuedomolecules, not 10,000 contigs



http://www.warelab.org/bugs/view.php?id=5129


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